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ACTIP Bulletin 23

December 2000

In this issue:

ESACT prepares for Medical Biotechnology Section
EU reinforces genome research
Genome mouse finished
On the web
FP 5 - New Workprogramme 2001

Industry trends in biotechnology
Some more predictions
The future of genomics in Europe

Regulatory news:
embryonic cells
certification TSE risk products
speedier approval procedures
Research news:
in utero immunization
success for alpha-glucosidase
gene knock out with laser pulse
dwindling support for plant research
tomato antigen vaccine
Business news:
delays implementation biotech patenting directive
patent application withdrawn
4C: high cell density bioreactor
Agenda


ESACT prepares for section Medical Biotechnology

The European Federation of Biotechnology (www.efbweb.org) is creating larger sections than the earlier working parties, pushing for improved links to industry and academia and devising ways of interlinking with cross national societies like ESACT. As a result of the closer rapprochement of late, ESACT has been preparing the ground for a Medical Biotechnology Section, whose main aim is to foster faster moves in Europe to push products and processes from biotechnology to clinical utilisation; a key component of such a section is, of course, to have members which are clinician practitioners. Working together with EFB and ESGT, a Steering Committee which met in Frankfurt last February, proposed a workshop entitled “From Medical Development to Clinical Practices” conducted under the aegis of the European Commission External Advisory Group “Cell Factory” which took place in Brussels last June; the report conclusions and summary can be consulted in (http://forum.europa.eu.int).

This allowed ESACT to invite some of the clinical participants to become members of the Medical Biotechnology Section. So, now, the Section seems ready to take off. ACTIP and ESACT members are invited to contact the ESACT Secretariat should they wish to become a member.


EU reinforces genome research

On November 15 last, the European Commision has launched an initiative to reinforce European activities in genome research related to human health. Genome research is strategically important for Europe as it is expected to unlock considerable economic, medical and social benefits. The development of new genome-based technologies, as well as new bioinformatics tools, is of primary importance for competitive genome research and for the development of new diagnostics and new therapeutic approaches. It is also important to create and maintain in Europe infrastructures to support genome research (for example, databases and animal model resources).

On 8 November, the Commission services and Member States experts agreed:
* to create a Forum of Genome Research Managers;
* to develop synergies between the Community programme and national activities, and
* to help network national programmes.

 

A European Genome Area

The Commission initiative on Genome Research for Human Health has two main features:

(1) to create a new type of project, the integrated project; and
(2) to strengthen the support for research infrastructures.

Other features of the initiative include a reinforcement of research into the ethical implications and societal impact of genome information. It is expected that in 2001 over EURO 100 million in total will be available for this initiative.

 

Integrated Projects

Integrated projects are designed to stimulate progress in functional genomics
relating to human health, by creating projects with critical mass, high impact
and high visibility. Each project should comprise a minimum of 150
researcher-years. It will have three components: research, networking, and
training and mobility within an integrated management structure. The research component is expected to achieve groundbreaking advances on methods
and technologies in functional genomics. The networking component will allow
the project to act as a federating force in the field, creating synergy with
and between national research efforts. The training and mobility component
should provide opportunities to train young researchers at Europe's top
research centres in the field.

Integrated projects will be selected by a novel procedure that involves a preliminary call for expressions of interest for topics that may be suitable for such support (deadline 9 February 2001). From these, a limited number of topics of strategic importance will be selected and these will be invited to submit under a dedicated call for proposals from which the integrated projects will be selected. This
dedicated call will be published in early summer 2001 (deadline 18 October
2001). The call for proposals and an explanatory memorandum are available from the ACTIP Secretariat.

Source: Press Release European Commission, 15-11; www.cordis.lu/life

Manuel Hallen, Quality of Life programme, Research DG. Tel : +32.2.295.74.07, E-mail manuel.hallen@cec.eu.int

 

 

Genome mouse finished

 

Mid October, Celera Genomics announced that 95% of the DNA of the mouse has been sequenced. Again, Celera beats a public-private consortium (the Mouse Sequencing Consortium) to the finish.
Source: Bionieuws Oct 28, 2000

 

 

On the web

 

The most up to date genome information, freely available from:

www.nature.com/genomics

An incredible amount of information and useful links can be found on the site of the Craig Venter created TIGR, the not for profit sequencing center:

http://igweb.integratedgenomics.com/GOLD

And for something completely different, namely art in the genetic age, visit:

www.geneart.org

 

New Work Programme 2001 !!

On November 15, 2000, the new FP5 Work Programme 2001, covering the Quality of Life Pogramme, was published. The programme has been adopted on several places to new developments in technology. Most notable is the emphasis given to genome research. Furthermore, there is
*reinforcement of the socio-economic objectives;
* clear guidelines of support for clinical trials (only support through demonstration projects, freeing budget for real RTD projects);
* reinforcement of demonstration projects;
* a separate paragraph for accompanying measures.

 

Emphasis on Genome Research

As part of the Commisson initiative on the European Genome Area (see above), genome research will be a research priority in Key Actions, generic RTD programmes and infrastructures. Integrated project on genomics and human health, will be accommodated under a new key action iten, Key Action 8.5. The call for an expression of interest has recently been issued.
Furthermore, in area 14 references have been included to genomic and proteomic databases and repositories of animal models.

 

Reinforcement demonstration projects

The Commission would like to see a strengthening of demonstration projects. Demonstration projects will be open in all Key Actions, but note:

there will not be any RTD projects but only demonstration projects in areas:
KA 3.1.1. Development of new diagnostics;
KA 3.2.1. New bioprocesses;
KA 3.3.2. High value added products
If you contemplate submitting a proposal for a demonstration project, carefully read the guide for proposers and the weighing of evaluation criteria (the weighing of criteria is different for RTD projects and demonstration projects).

 

Calls for proposals

As already mentioned, a separate call for expression of interest in genome research has recently been issued. There will also be a separate joint call of the Quality of Life and Environment programmes on endocrine disruptors.

Last date for FP5: October 2001

As for the 'regular' call for proposals, the deadlines of October 10, 2001 and March 2002 will be fused, since projects starting late in 2002 would hardly have 2 years to run. Thus, please note that October 10, 2001 will be the ultimate date that projects can be submitted for FP5 under dedicated calls for proposals.

 

Deadlines (last chances!)

The following deadlines have been set for Key Actions that might be of interest to the membership:

KA 1. Food, nutrition and health:
3.1. Promoting and sustaining health, including toxicology: March 15, 2001

KA 2. Infectious diseases:
All areas open, but clinical testing only as demonstration projects. Deadline: October 2001

KA 3. Cell Factory
Deadline of March 15, 2001 for:
3.1.2. Therapeutic substances
3.1.4. Novel in vitro testing systems
3.3.3. Functional biomolecules
Deadline of October 18, 2001:
3.1.1. New diagnostics (demonstration projects only!)
3.1.3.

KA 4. Environment and health
4.2.2. Improvement predictive toxicity testing: March 15, 2001

KA 6. Ageing population
All areas: deadline March 15, 2001

Generic research
All areas. Deadline October 18, 2001

Fellowships:
Deadlines April 11, October 10, 2001

Accompanying measures:
Deadlines February 9, June 12, October 11, 2001

 

 

Industry trends in biotechnology

 

The Nature Biotechnology Volume 18 supplement October 2000 is entirely devoted to Industry Trends in Biotechnology. It containes snapshots of industry's fastest moving fields. The selection of topics includes some of the hottest areas and issues in biotechnology. The content focuses mainly on technology platforms and disease areas, and each article refers to companies active in the fields mentioned.

In the area of diseases, some of the biggest killers and debilitators have been included. According to estimates of the editor, the total disease burden, both in direct and indirect costs, of the eight diseases covered amounts to a staggering $ 500 billion. Nevertheless, all of these diseases are manageble today. Several articles cover many of the technology platforms offered by biotechnology companies. Feeding these technology platforms are fields of biology where research is rapidly advancing. In addition, two articles are entirely devoted to business issues.

To give you a taste of the articles, I have summarized here the topics to be discussed and some of the most salient statements to be found in the articles.

 

 

Business

 

Business models in biotech

* companies with technology platforms that address only a tiny part of the drug discovery process risk becoming optional or redundant accessories;
* there is no long-term business opportunity based on a narrow technology platform that can support today's valuations of several hundred to a few billion dollars;
* the ability of a biotech company to leverage its platforms into multiple projects and sell the same outputs more than once in different packages is likely to give rise to a good business;

Competitive business intelligence gathering and analysis

* intelligence systems are providing an answer to the avalanche of information in science and business

 

 

Diseases

 

Autoimmune diseases

* rapid progress in our understanding of immune function promises more effective treatments for autoimmune disorders;
* the advent of large amounts of genomic information is enabling a systematic attempt at correlating homologies between pathogens, such as viruses and bacteria, and specific self-proteins

 

Asthma

* with asthma cases on the rise, a better understanding of the disease on the molecular and systems levels promises more efficacious treatments;
* asthma is a multifactorial disease with multiple potential drug targets, whose therapeutic potential remains to be resolved;

 

Arthritis

* the ageing populations of developed countries are likely to present a growing market for arthritis therapies;
* arthritis is now a disease that is fought with many drugs. On the whole, these drugs treat inflammation as a symptom, but do not address the actual cause of the disease;
* increasing understanding of the molecular cascades involved are already producing significantly better drugs than in the past with increased selectivity and fewer side effects;

 

Cardiovascular disease

* prognostic/diagnostic testing and a raft of new drug targets from genomics promise to transform cardiovascular medicine;
* in addition to improved surgical procedures and drugs, cardiovascular medicine is beginning to make use of the flood of genomic information emerging from tissue specific sequencing projects;

 

Cancer multidrug resistance

* progress in understanding the molecular basis of drug resistance in cancer promises more effective treatments;
* there are probably other multidrug resistance inducing molecules in cancer cells that have yet to be characterized, including ones that belong to the MDR-1 and MRP protein superfamilies;
* cancer defends itself actively by using resistance-mediating transporter mechanisms, and therefore their impairment is likely to have a significant therapeutic benefit;

 

Malaria

* together with major international initiatives, companies are launching an offense against the world's most deadly parasitic diease;
* malaria is a curable disease if promptly diagnosed and adequately treated. In addition, significant lessening of its effects and spread can be accomplished by preventive measures;

 

Antibacterial and antifungal drug discovery

Companies are racing to keep pace with the emergence of drug-resistant micro-organisms;

 

HIV

* the need for new treatments for AIDS is more urgent than ever;
* AIDS has attracted vast resources from governments, universities and industry the world over for the single purpose of controlling, preventing, and ultimately curing the disease;
* more than 100 new medicines against AIDS are currently being tested;


Technologies

 

Bioinformatics

* companies are selling research software to a small number of rich clients or offering services to researchers over the Internet;
* the market appears to be significant and growing rapidly, driven partly by a focus on genomics, pharmacogenomics, biochips;
* integration of data acquisition, storage, manipulation, analysis and dissemination in a cross-platform manner, unambiguous gene sequence assignment, and development and application of new language and ontology-based approaches are all at the leading edge of the field;

 

Data mining

* software and services are developed to analyze complex biological and chemical data in an intuitive and efficient manner
* data mining is emerging within the biopharmaceutcial industry as a significant ally in the analysis of biological data sets in a way that compliments and expands traditional bioinformatics;

 

Signal transduction

* mapping the key signaling molecules in biochemical pathways will be central to future drug discovery efforts;
* all major pharmaceutical and biotechnology companies have active drug discovery programs based on understanding signal transduction pathways

 

Pharmacogenomics

* information on human genetic variance is only just beginning to be used in drug development;
* the greatest challenge by the pharmacogenomics industry is the systematic correlation between normal versus disease patterns of gene expression in a statistically meaningful way;
* drugs that are more specific, not only in terms of the particular molecule they target, but also in the populations they affect, will be much more widely accepted and used in the future, and initial applications may revolve around infectious diseases

 

Biochips

* with products already on the market, biochips are likely to have an increasing impact on genetic diagnostics, drug discovery, and basic research applications

 

Proteomics

* by globally catalogueing cellular protein content and state, proteomics promises to complement genomics in drug discovery and basic research

 

Lead validation platforms

* a battery of screening systems are under development to validate compounds for further development;
* the key lead validation challenge is the development of high-throughput screens that also provide clinically useful information. Inevitably, there is a trade-off between the ease and speed of a test, and value of the information given;
* it will be a synthesis of the information derived from as many of these screening techniques as possible that will provide the most important insights into the behaviour of a lead in a clinical setting;

 

Combinatorial chemistry

* to avoid becoming a commodities industry, combinatorial chemistry companies are broadening their technology base;

 

Xenotransplantation

* work to combat immune rejection is progressing, concerns remain as to the risks of disease transmission;
* the final challenge to the development of xenotransplantation as a viable therapy is the prospect of novel infections, particularly viral ones, being introduced through the recipient into the human population;
* society's need, in conjunction with clinical efforts and corporate interest in this area, promise to keep xenotransplantation in the limelight as a technology to watch;

 

Tissue engineering

* despite technical and regulatory challenges, the prospects for tissue engineering are good;
* tissue engineering is emerging as a vibrant industry with a huge potential market


Source: Nature Biotechnology Vol 18 Supplement 2000. The ACTIP Secretariat may be approached for a copy of the publication.

 

 

And some more predictions:

The golden age of pharmaceutical industry

 

Randy Scott, president of Incyte Genomics, predicts that in 2010 the molecular basis for most major diseases will be understood, resulting in numerous new targets for the pharmaceutical industry. His predictions include:

* 2000: every gene sequenced;
* 2001: every EST on a chip;
* 2002: all frequent coding SNPs identified;
* 2002: a full length cDNA for every gene;
* 2005: virtually every signaling pathway identified;
* 2007: a chemical compound that effects most major signaling pathways;
* 2010: understanding the molecular basis for most major diseases?

An interesting article, available from the ACTIP Secretariat
Source: Conceptuur, no 24, Sept 2000


The Future of Genomics in Europe

 

In the beginning of November, a 2-day conference, organized by the Life Sciences High Level Group of Experts (advicers to Commissoner Busquin), was held in Brussels. There were sessions on Human Health, Food Integrity & Supply, Valuing Biodiversity and Responsible Use of Genomics. Below you will find my own (Helma Hermans') interpretation of key points mentioned during the two day conference. Please note that I do not refer to one single speaker, but have mixed my notes from different presentations.

 

The challenges

Three challenges of genome technologies could be identified: scientific, economic and cultural

(1) scientific:
* the human genome project's current and future tasks: finalize the sequence (fill in the gaps & confirm), find predisposing sequence variations, search for function (biological goals, biochemical activities, cellular structures);
* the technologies: bioinformatics, transcriptomics, proteomics, two-hybrid systems;
* the need: the EU needs centers of excellence in gene therapy;
* we should strive for 'science with dignity'

(2) economic:
* Europe is catching up with the US in terms of number of biotechnology start up companies, but the US still invests much more in R&D and the companies have more employees;
* Europe needs an innovation culture which requires excellence in science;
* the benefit of genomics is diffuse and the cost potentially great;
* genomics will probably be a case where individual benefits outweigh social costs;


(3) cultural:
* as a society we have to take responsible decisions, and we have responsibility for new norms;
* science should be brought into the collective conscience;
* responsible use of genetics is about avoiding abuse/misuse and about promising benefits;
* the genetic revolution happens in a much more public arena than other scientific revolutions;
* the Eurobarometer study clearly shows that people do not trust industry and government;
* public hesitancy in accepting (some) new technologies has little to do with public understanding of facts;
* there are concerns about gene becoming a danger word:
(1) reluctance of scientists to explain what they are up to - genetics is too important to be left to experts;
(2) very negative portrayal of the life sciences in fiction (X-files, Jurassic Park, Frankenstein) - journalism is driven by entertainment, not information;
(3) the yuk-factor;

* with genomics we come on the slippery slope of genetic screening, gender choice, embryo selection, genetic manipulation, cloning;

* genetic testing will take the form of diagnostics (disorders), presymptomatic screening (family history), screening of healthy carriers (reproductive, preventive) and predictive (about increased or reduced chances to get a disease);
* genetic information should be private;
* people who are different should be valued;
* genomics will pave the way for the phenomenon of the 'unpatient';

 

 

Regulatory news

 

Supporting the use of embryonic cells

Dutch government has drafted a proposal for an act in which human embryonic cells should be allowed for medical and biological research. However, embryos should not be grown specifically for that purpose; only ova and embryos left over from in vitro fertilization attempts can be used. The proposal still needs to be debated. Therapeutic cloning will not be possible.
Source: Wetvoorstel inzake handelingen met geslachtscellen en embryo's: http://www.volkskrant.nl/nieuws/den_haag/350033953.html?history=/i335020922

 

Workshop on certification of suitability for TSE risk products
Jan 11, 2001, Strasbourg, France

The EDQM is pleased to invite all interested parties to a workshop so that you may become more familiar with the contribution of the TSE certification procedure. This certification procedure is intended to demonstrate compliance to the amended EU Directives 75/318/EEC for human products and 81/852 EEC for veterinary products, and with the status of the procedure. The content and preparation of the dossiers will be dealt with, as well as some specific cases (gelatin, tallow derivatives etc.)
This workshop is especially intended for manufacturers or users of biological substances and excipients in industry. It will emphasize the practical aspects of making up dossiers.

 

Pestivirus contaminations of bovine sera and other bovine viruses contaminations
Paris, March 29-30, 2001

The EDQM also organizes a two-day meeting to clarify the technical and regulatory questions surrounding sourcing, production, testing and use of bovine sera. In addition to scientific and technical presentations and discussions, the last part will focus mainly on the detection and inactivation of methods in order to propose recommendations in this field.
For both the workshop and the 2-day meeting, extensive information is available from the ACTIP Secretariat or from EDQM (Caroline le Tarnec, tel + 33 3 88 41 28 15).
Drug firms want speedier approval procedures
EU pharmaceutical firms have called on Enterprise Commissioner Erkki Liikanen to streamline the current drug approval process, claiming it is preventing vital medicines from reaching the market quickly. The demand comes as the European Commision is preparing plans to restructure EMEA. According to EFPIA, EMEAs performance has been excellent, with the organization living up to its promise to report on new applications within 210 days. However, the required consultation round with all EU member states add an average 90 days to getting a medicine authorized. According to EFPIA, the bureaucracy is the problem. Red tape is also clogging up the procedure of 'mutual recognition', a procedure which does not seem to work at all.
Source: European Voice, October 18, 2000

 

 

Research news

 

In-utero immunization technique

Reseachers of the Veterinary Infectious Disease Organization at the University of Saskatchewan have developed a method for inoculating livestock in utero. The same method could also be used to vaccinate human babies against viral diseases such as herpes simplex, hepatitis B, human cytomegalovirus, and group B streptococcus, all of which are most frequently contracted from the mother during or shortly after birth. The researchers injected fetal lambs with a DNA vaccine for bovine herpesvirus-1. The vaccine caused the lambs to produce mucosal antibodies to the virus, but otherwise they developed normally during gestation and after birth.
Source: Canadian Biotech News, Sep 11, 2000 http://www.canadianbiotechnews.com

 

Alpha-glucosidase keeps babies alive

A recent publication in The Lancet demonstrates how treatment with alpha-glucosidase has kept 4 babies with Pompe's disease already alive for more than one yera. Their muscles have become stronger and the heart muscle functions better. The children will have to use the product for the rest of their lives. Depending on clinical tests, Pharming hopes to register the drug at the end of 2001.

 

Gene technology with laser pulse

Researchers at the US Beckman Laser Institute have developed an innovative method to knock out genes. They used a two-photon laser microscope to direct a very narrow, high energetic laser pulse on a previously selected part of a chromosome. The chromosome was coloured with a fluorescent dye, making it sensitive to the laser light. With this technique they succeeded in knocking out a number of ribosomal genes in Potorous tridactylis, a marsupial with extremely flat cells in cell culture. Source: PNAS 97 (17): 9504.

 

Support for EU plant research in europe plummets downward

Support for plant science research by the European Union has been dropping sharply. In FP5 there has been a two-thirds reduction in the number of successful plant research proposals funded by the EU. Dutch authorities are in the midst of implementing a 30% cut of plant research funding over 5 years and have ended funding for all collaborative projects. All Danish programs in plant biotechnology will expire by 2002, and no new initiatives are planned. According to Nature Biotechnology (18, pg.919) Italy's Green minister for agriculture and forestry, Alfonso Pecoraro Scanio, is pushing Italian agbiotech research to the point of collapse. There has been a 75% cut of financial resources for research inside the agriculture ministry in the last two years. In addition GM field trials have fallen from about 40 in 1999 to 26 this year. "The precautionary principle is turning out to be a 'no experimentation principle'," says Roberto Defez. In practice, this means a halt to research, whether in applied sectors or in biosafety.
Source: 31/8/2000 ; ref: PK2091

 

GM tomato rsv antigen vaccine

University of Illinois scientists report in the Eur. J. Transgenic Research on a tomato derived edible vaccine and tests. The scientists used the expressed major protein on the outside envelope of the respiratory syncytial virus. Increased antibody production in the mucosal and serum immune systems of mice was observed when fed five times with GM tomatoes. Source: 2/8/2000 ; ref: AN2042

 

 

Business news

 

Delays in implementing biotechnology patenting directive

By June 2000, the EU biotechnology patenting directive should have been implemented in the EU member states. As per September 2000, it was only implemented in Denmark, Finland, Ireland, and the UK. The directive is under discussion or in the form of a draft proposal in Austria, Belgium, France, Germany, Greece, Italy, Spain, Sweden, and The Netherlands.

Source: CEFIC/FEBC, personal communication

 

Patent application human/animal embryos withdrawn

Under pressure of Greenpeace, companies Australian Stem Cell Sciences and US BioTransplant have withdrawn their patent application covering technologies to create human embryos using animal cells. The patent application covered the transfer of the nucleus of one species to the cell of another, creating i.e. a human nucleus into an enucleated pig ovum. A 32-cell embryo was the result. Nuclear transfer is potentially of interest in the cultivation of tissues and organs for xenotransplantation.
Source: http://www.sunday-times.co.uk; http://www.greenpeace.org; http://www.informagen.com/Resource_Informagen/Full/8252.html; Patent application: http://l2.espacenet.com/dips/viewer?PN=WO9921415&CY=ep&LG=en&DB=EPD

 

.... and a new Xenotransplant company

Biotechnology companies Novartis and BioTransplant have announced the establishment of a joint company, to be based in Boston, for the development of xenotransplantation. BioTransplant is active in the development of systems reducing immune rejection and works on both allo- and xenotransplants. Novartis will contribute Cambridge-based subsidiary Imutran.
Source: BioTransplant: http://www.corporate-ir.net/ireye/ir_site.zhtml?ticker=btrn&script=410&layou t=7&item_id=119262

 

High cell density bioreactor with ultrafast on-line dsp

Computer Cell Culture Center was set up in 1989 by our good friend, prof. Alain Miller. In March 1999, the company raised 150 million Bfrs in a private placement.
Based on the concepts developed by its founder, 4C has improved and implemented a number of original technologies to achieve mammalian cell cultures at high densities, which is claimed to have a dramatic impact on production and product development costs. For the future, 4C envisions development in 4 areas:
* production and sales of research biologicals;
* contracted GMP production;
* contracted process development;
* proprietary biotherapeutics; bioartificial organs
A recent patent application covers integration of high cell density bioreactor operation with ultra fast on-line downstream processing.
Please contact prof. Miller or the ACTIP Secretariat if you are interested in more details: Prof. Alain Miller, 4C, tel + 32 64 52 05 60, fax + 32 64 55 86 17. web: www.4c.be


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